So highly complex that not only are the big, dark holes (ala Behe's box) in the theory and calculations, but -- in reality, also according to the scientist quoted earlier associated with a natural museum.
Depends on what you mean by "big dark holes" in terms of what you may be referring to, plus let me add that there's also plenty of "big dark holes" when it comes to dealing with the Creation accounts as well.
And from my peerings into the works and minds of evolutionists as they relay the evidence trying to pair it with the theory, no -- or yes -- it doesn't add up. Meaning there is nothing to ascertain that God did not initiate life, the cause of life, or that he did not use minerals and genetics to do as He will when creating life according to His will
Again, we in this area of science do not assume that God (or Gods) don't exist as we can't observe nor test for God(s).
So while this may sound like a sweeping statement, I have not seen anything whatsoever in scientific theorums that would prove beyond a shadow of a doubt (or conjecture) that the lifeforms we see on earth today came about as a result of the mechanics of evolution.
We do know that the "mechanics of evolution" do entail mutation, genetic drift, and natural selection. We also know that new species developed over time, such as the evidence can be seen if you google "speciation". What we don't know scientifically is how it all started and/or whether God or Gods were behind it all.
It is important not to have a double-standard, thus if we can question aspects of the ToE, which we do in science all the time btw, then theists should do the same in regards to Divine creation.
For a quick example, how exactly does a theist supposedly know it's not God
s that were behind this all? Try and deal with this question objectively and see how far you get.