There are two things about the OP that are just mistaken. First, the presumption that scientific theories can be "refuted", which as I noted, they aren't. They are replaced with theories that better fit the information we have and how we are using it. Second, implicit is the idea that the only alternative to the theory of evolution to explain diversity of species is "Creationism" or ID. However, those are simply not scientific explanations and do not attempt to provide a predictable explanatory mechanism based on observation. Thus, they would never be the theory that replaces evolution if by some freakish chance the mountains of evidence that support it were to somehow spontaneously crumble and a new theory had to be developed.
BTW, we know for a fact that the basic models we use for energy and matter are probably deeply flawed and incomplete. We can't even account for most of the mass in the universe and we haven't the foggiest idea what gravity really is yet. Nevertheless, all of our models for physics and chemistry are still quite useful for what we are doing with them despite that we know they are at best incomplete and possibly quite mistaken.