First, we have to agree what it means to be transitional. How would you define a fossil to be an example of, say, the transition between reptile and mammal? What characteristics do you think it would show?
I ask this because many creationists have a very distorted idea of what it means to be a transitional species. it doesn't mean you have a crocoduck, for example. It means that you have a species with some characteristics of reptiles and some of mammals and some that are intermediate.
And we *do* have many examples of these. The reptile to mammal transition is very well documented. The fish to amphibian is also. When you ask for 'amphibians to lizards', you are being more specific about the reptile than maybe you think: lizards have some very definite characteristics and were *not* the first reptiles. None of the modern classes of reptiles were.
And yes, the fossil record *does* show that there is large scale change in fauna (and flora) over many generations. You simply won't find a modern horse in Miocene strata, for example. You won't find modern elephants either. That they didn't exist 30 million years ago and they do exist now shows large scale change in fauna.
Finally, at the species and genus levels, much evolution happens in small, isolated populations (which is why we see so many finch species in the Galapagos, for example). The problem is that fossilization is fairly rare, so we *don't* expect to see each and every stage of the transitions, especially when they happen in small populations.
So when you claim such transitions should be numerous, you are wrong. We *expect* them to be rare, but to exist. And that is what we see.