Then naturally you can readily respond to what I quoted. Alternatively, we could realize that doing nuclear physics is about as relevant here as having a degree in chemistry. I had to past graduate tests in nuclear physics, and the one interesting component of them (IMO) was how much nuclear physics merely an overlap of areas from particle physics, quantum mechanics, and QFT(s). The easy questions were concerned with scattering that one encounters at the origins of quantum mechanics and the rest were mainly quantum & particle physics as applied to radioactivity and nuclear reactions. It's practically applied particle physics without most of the field theories or most of their content. I am not a nuclear physicists, and will not be one even if I obtain my doctorate in physics, because I"m not interested in such a limited field.
However, you can continue to ignore the text I quoted from in response to your scathingly dismissive (and incorrect) comment if you wish. In the meantime, I have decided to provide a short summary of my answer to your original question to "put up" rather than refer you to previous posts. The first problem is the question itself. It is hard to answer "what argument from religious or christian apology have the new atheist not answered or prove incapable of inanswering?" precisely because this is one area they fail so completely at (that is, not being familiar either with previous criticisms of Christian apology- the most well-known- or Christian apology, they don't answer it at all, and as they claim to at times by including sections about Christian apology, one is force to conclude either that they are liars or that they are simply ignorant here, as I do not believe they lack the acumen to understand what they gloss over almost completely). Along with this is something fundamental to Christian apology which concerns the nature of reason, justified true belief (JTB) or epistemic justification, the nature of evidence, etc. Here the new atheists generally start with the assumption of a kind of simplified (for the reader, one assumes, at least in the case of those like Dawkins) version of the scientific approach (they even refer to god as a hypothesis, neatly glossing over exactly what this means in terms even of the philosophy and history of the sciences). Most of Plantinga's Warranted Christian Belief concerns the de jure aspect of Christian belief, and the same may be said of any good apology or criticism thereof.
And, to make physics relevant again and even make astrophysics, theoretical physics, particle physics, and cosmology relevant as well, one argument they wholly fail at dealing with is the so-called "fine-tuning" argument. This is not the fine-tuning of species or related in anyway to biology or living systems or whatever. I speak of what physicists find fundamentally problematic (read: requiring an explanation) with the ways in which the universe appears not only to require extremely precise constants for us to exist (or life for that matter), but the organisation and homogeneity of the "unfolding" or expanding of the universe since the big bang. As I've noted elsewhere, this appears to be enough "evidence" of design to motivate physicists such as Weinberg and Susskind to support multiverse theories because they do away with the need to invoke a designer (they don't, as Davies noted and can be seen in great detail in theistic multiverse cosmologies, particularly Amoroso & Rauscher HAM theory). I believe Dawkins addresses this as being unsatisfactory because it just begs the question "who created the designer?" The problem with this argument is firstly that much of physics (and indeed scientific) research is answering one question by proposing another problem. Second it confuses explanation and answer. Once again, epistemology becomes highly relevant but as the new atheists assume one (mostly implicitly), we find that Dawkins is assuming God as an explanation for evidence of a "designed" universe and asking given this explanation, we've explained nothing and introduced the requirement of another explanation. By contrast, the fine-tuning argument is more about an answer. A simplistic illustration might by the difference between providing the answer to 2+2=4 vs. an explanation (a better, albeit still simplistic, illustration would be the nature of entailment: given a premise and a conclusion that logic dictates must follow, explain why it must follow other than that logic dictates it must). Most of the new atheists don't address it or do but with the same problem (conflating epistemology with the methods and nature of scientific inquiry and failing to provide a basis for what it means to be rational or to be justified in ones beliefs and why at even so simplistic a level as the Achilles and the Tortoise tradition in the philosophy of logic that Lewis/Dodgson began).
Other serious failings can be summed up by the word "historiography" and the failure of all of the new atheists to adequately deal with everything from textual criticism to the history of the Western intellectual tradition.