Murdering a fellow Muslim is a grave sin. As to the rest of us, just read 9:29 and 9:111 and get back to me.
Btw, the order to kill is given dozens of times in the Qur'an, but I'm sure you know that.
Actually, believers can fight each other per Quran:
وَإِنْ طَائِفَتَانِ مِنَ الْمُؤْمِنِينَ اقْتَتَلُوا فَأَصْلِحُوا بَيْنَهُمَا ۖ فَإِنْ بَغَتْ إِحْدَاهُمَا عَلَى الْأُخْرَىٰ فَقَاتِلُوا الَّتِي تَبْغِي حَتَّىٰ تَفِيءَ إِلَىٰ أَمْرِ اللَّهِ ۚ فَإِنْ فَاءَتْ فَأَصْلِحُوا بَيْنَهُمَا بِالْعَدْلِ وَأَقْسِطُوا ۖ إِنَّ اللَّهَ يُحِبُّ الْمُقْسِطِينَ | If two groups of the faithful fight one another, make peace between them. But if one party of them aggresses against the other, fight the one which aggresses until it returns to Allah’s ordinance. Then, if it returns, make peace between them fairly, and do justice. Indeed Allah loves the just. | Al-Hujuraat : 9
The clause is important in the verse you quoted in 5:32. We have to assess which of the two are in the wrong and causing mischief.
وَالَّذِينَ إِذَا أَصَابَهُمُ الْبَغْيُ هُمْ يَنْتَصِرُونَ | those who, when afflicted by oppression, defend themselves. | Ash-Shura : 39
وَجَزَاءُ سَيِّئَةٍ سَيِّئَةٌ مِثْلُهَا ۖ فَمَنْ عَفَا وَأَصْلَحَ فَأَجْرُهُ عَلَى اللَّهِ ۚ إِنَّهُ لَا يُحِبُّ الظَّالِمِينَ | The requital of evil is an evil like it, so whoever excuses and conciliates, his reward lies with Allah. Indeed, He does not like the wrongdoers. | Ash-Shura : 40
وَلَمَنِ انْتَصَرَ بَعْدَ ظُلْمِهِ فَأُولَٰئِكَ مَا عَلَيْهِمْ مِنْ سَبِيلٍ | As for those who retaliate after being wronged, there is no ground for action against them. | Ash-Shura : 41
The word for defend, is a word that actually says they seek victory over their oppressors.
إِنَّمَا السَّبِيلُ عَلَى الَّذِينَ يَظْلِمُونَ النَّاسَ وَيَبْغُونَ فِي الْأَرْضِ بِغَيْرِ الْحَقِّ ۚ أُولَٰئِكَ لَهُمْ عَذَابٌ أَلِيمٌ | The ground for action is only against those who oppress the people and commit tyranny in the land in violation of justice. For such there will be a painful punishment. | Ash-Shura : 42
There is two type of fassads, we can conclude on the verse 42:42. One is oppressing people and the other is "rebelling in the land without truth". So we have to assess, is the rebellion legitimate on truth or is it falsehood. That means we have to assess who is oppressors and who is oppressed. Because oppressed have right to seek victory over oppressor. Does this mean everyone should take up arms against every oppressing government?
This is where we need to fill a bit of details. The Quran shows Mohammad (s) was patient when oppressed in Mecca, but when he was kicked out and invited by Yathrib, he was invited to be leader in governmental sense. So Mohammad (s) then had to defend city.
This is because rising up is only to be done with support. Otherwise, you better play chicken till the right time. In the words of Imam Ali (a):
Sermon 5: O people, steer clear through the waves of mischief...
Delivered when the Holy Prophet died and ‘Abbas ibn ‘Abd al-Muttalib and Abu Sufyan ibn Harb offered to pay allegiance to Amir al-mu’minin for the Caliphate
ومن كلام له (عليه السلام) لمّا قبض رسول الله(صلى الله عليه وآله)
وخاطبه العباس وأبوسفيان في أن يبايعا له بالخلافة
(وذلك بعد أن تمّت البيعة لابي بكر في السقيفة، وفيها ينهى عن الفتنة ويبين عن خلقه وعلمه):
O People!
1
Steer clear through the waves of mischief by boats of deliverance, turn away from the path of dissension and put off the crowns of pride. Prosperous is one who rises with wings (i.e. when he has power) or else he remains peaceful and others enjoy ease. It (i.e. the aspiration for Caliphate) is like turbid water or like a morsel that would suffocate the person who swallows it. One who plucks fruits before ripening is like one who cultivated in another’s field.
أَيُّها النَّاسُ، شُقُّوا أَمْوَاجَ الفِتَنِ بِسُفُنِ النَّجَاةِ، وَعَرِّجُوا عَنْ طَريقِ الـمُنَافَرَةِ، وَضَعُوا تِيجَانَ الـمُفَاخَرَةِ. أَفْلَحَ مَنْ نَهَضَ بِجَنَاح، أوِ اسْتَسْلَمَ فَأَراحَ، مَاءٌ آجِنٌ، وَلُقْمَةٌ يَغَصُّ بِهَا آكِلُهَا، وَمُجْتَنِي الَّثمَرَةِ لِغَيْرِ وَقْتِ إِينَاعِهَا كالزَّارعِ بِغَيْرِ أَرْضِهِ.
If I speak out they would call me greedy towards power but if I keep quiet they would say I was afraid of death. It is a pity that after all the ups and downs (I have been through). By Allah, the son of Abu Talib
2 is more familiar with death than an infant with the breast of its mother. I have hidden knowledge, if I disclose it you will start trembling like ropes in deep wells.
فَإِنْ أقُلْ يَقُولُوا: حَرَصَ عَلَى الـمُلْكِ، وَإنْ أَسْكُتْ يَقُولُوا: جَزعَ مِنَ المَوْتِ! هَيْهَاتَ بَعْدَ اللَّتَيَّا وَالَّتِي! وَاللهِ لاَبْنُ أَبي طَالِب آنَسُ بالمَوْتِ مِنَ الطِّفْلِ بِثَدْي أُمِّهِ، بَلِ انْدَمَجْتُ عَلَى مَكْنُونِ عِلْم لَوْ بُحْتُ بِهِ لاَضْطَرَبْتُمُ اضْطِرَابَ الاْرْشِيَةِ في الطَّوِيِّ البَعِيدَةِ!
(1) Sibt ibn al-Jawzi,
Tadhkirah,
bab 6, 137;
(2) al-Tabarsi,
al-'Ihtijaj, I, 127;
(3) al-Bayhaqi,
al-Mahasin, II, 139, see ‘Arshi.